A collection of functional genome annotations with transcriptional activities.
fanta.bio is a database of cis-regulatory elements (CREs) with their genomic locations, activities in various cell types and states, and related genomic variations in human, mouse, and non-human primate genomes.
Data Sources
CAGE and NET-CAGE data GSE118075
Hirabayashi S, Bhagat S, Matsuki Y, Takegami Y, Uehata T, Kanemaru A,
Itoh M, Shirakawa K, Takaori-Kondo A, Takeuchi O, Carninci P, Katayama
S, Hayashizaki Y, Kere J, Kawaji H, Murakawa Y. NET-CAGE characterizes
the dynamics and topology of human transcribed cis-regulatory elements.
Nat Genet. 2019 Sep;51(9):1369-1379. PMID:31477927
MoG+, mouse genome database with high added value. https://molossinus.brc.riken.jp/mogplus/
Takada T, Fukuta K, Usuda D, Kushida T, Kondo S, Kawamoto S, Yoshiki
A, Obata Y, Fujiyama A, Toyoda A, Noguchi H, Shiroishi T, Masuya H. MoG+:
a database of genomic variations across three mouse subspecies for biomedical
research. Mamm Genome. 2022 Mar;33(1):31-43 PMID:34782917 .
Updates
- October 05, 2023:
Release of the CRE annotation pages and their search interface.
- March 28, 2023:
Initial release of the alpha version of fanta.bio database.