CRE ID : FCHS_301315

CRE Name : cp10@SOX2-OT

Genomic Position
chr3 : 181610161 .. 181610720
Organism
Human (GRCh38/hg38)

Promoter/TSS Annotation

Nearest transcript IDs
ENST00000476964.6, ENST00000657986.1, ENST00000725589.1, ENST00000665033.1, ENST00000661842.1, ENST00000492337.6, ENST00000643769.1, ENST00000642652.2, ENST00000485035.4, ENST00000725601.1, ENST00000642685.2, ENST00000725577.1, ENST00000665112.1, ENST00000646712.2, ENST00000725602.1, ENST00000498226.6, ENST00000725598.1, ENST00000725567.1, ENST00000476125.5, NR_075090.1, NR_075089.1, NR_004053.3, KF981435, JN711430, JN882275, AK022826
Nearest transcript distance
0
Promoter GeneID
347689
Promoter HGNC ID/MGI ID
HGNC:20209
Promoter UniProt ID
Promoter Gene Names
SOX2 overlapping transcript
Promoter Gene Symbols
SOX2-OT
Promoter Gene Synonyms
DKFZp761J1324, NCRNA00043
Overlapped FANTOM5 CAGE Peaks
id: hg19::chr3:181328144..181328156,+;hg_39980.1
name: p6@SOX2-OT
id: hg19::chr3:181328302..181328339,+;hg_39981.1
name: p4@SOX2-OT
id: hg19::chr3:181328346..181328351,+;hg_39982.1
name: p22@SOX2-OT
id: hg19::chr3:181328363..181328382,+;hg_39983.1
name: p5@SOX2-OT
id: hg19::chr3:181328387..181328399,+;hg_39984.1
name: p16@SOX2-OT
id: hg19::chr3:181328459..181328465,+;hg_39985.1
name: p27@SOX2-OT
id: hg19::chr3:181328472..181328478,+;hg_39986.1
name: p25@SOX2-OT
id: hg19::chr3:181328499..181328502,+;hg_39987.1
name: p32@SOX2-OT
Overlapped refTSS TSSs

Enhancer Annotation

Overlapped FANTOM5 Enhancers

CRE Annotation

Overlapped SCREEN cCREs
id: EH38E2262580
type: PLS
id: EH38E3556615
type: PLS
Overlapped SilencerDB Silencers
HS_00758284 (Induced pluripotent stem cell)
HS_00758285 (Brain)
HS_00758286 (Embryonic stem cell)
HS_00758287 (Cervix)
HS_00758288 (Embryonic stem cell)
HS_00758289 (Spinal cord)
HS_00758290 (Induced pluripotent stem cell)
HS_00758291 (Induced pluripotent stem cell)
HS_00758292 (Brain)
Overlapped VISTA Enhancers
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Fanta.bio is a collection of functional genome annotations with transcriptional activities. This database is supported by JST NBDC Grant Number JPMJND2202

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CRE data version: v1.2.1 , Website version: v2.0.29-beta.2