Name: cp1@SOX2-OT
Creator: fanta.bio
License: https://creativecommons.org/licenses/by/4.0/

CRE ID : FCHS_301336

CRE Name : cp1@SOX2-OT

Genomic Position: chr3 : 181698911 .. 181699775
Organism: Human (GRCh38/hg38)

Promoter/TSS Annotation

Nearest transcript IDs: ENST00000600801.7, ENST00000596250.7, ENST00000477928.1, ENST00000693669.2, ENST00000642301.2, ENST00000466034.7, ENST00000725603.1, ENST00000629112.5, ENST00000629273.3, ENST00000630887.5, ENST00000629830.4, ENST00000627501.4, ENST00000725563.1, ENST00000600962.6, ENST00000628496.3, ENST00000593549.6, ENST00000599082.2, ENST00000595287.1, ENST00000627530.3, ENST00000597651.6, ENST00000600386.6, ENST00000628343.4, ENST00000598474.4, ENST00000595084.3, ENST00000626299.4, ENST00000629781.4, ENST00000630553.1, ENST00000600778.4, ENST00000725576.1, ENST00000625581.2, ENST00000631025.2, ENST00000629552.2, ENST00000626619.2, ENST00000628347.1, ENST00000725564.1, BC016393, AL157425
Nearest transcript distance: 0
Promoter GeneID: 347689
Promoter HGNC ID/MGI ID: HGNC:20209
Promoter UniProt ID
Promoter Gene Names: SOX2 overlapping transcript
Promoter Gene Symbols: SOX2-OT
Promoter Gene Synonyms: DKFZp761J1324, NCRNA00043
Overlapped FANTOM5 CAGE Peaks: id: hg19::chr3:181417231..181417239,+;hg_39989.1
name: p12@SOX2-OT
id: hg19::chr3:181417241..181417256,+;hg_39990.1
name: p3@SOX2-OT
id: hg19::chr3:181417264..181417270,+;hg_39991.1
name: p7@SOX2-OT
id: hg19::chr3:181417276..181417285,+;hg_39992.1
name: p8@SOX2-OT
id: hg19::chr3:181417345..181417351,+;hg_39993.1
name: p34@SOX2-OT
id: hg19::chr3:181417353..181417371,+;hg_39994.1
name: p1@SOX2-OT
id: hg19::chr3:181417374..181417407,+;hg_39995.1
name: p2@SOX2-OT
id: hg19::chr3:181417420..181417430,+;hg_39996.1
name: p9@SOX2-OT
id: hg19::chr3:181417483..181417491,+;hg_39997.1
name: p44@SOX2-OT
id: hg19::chr3:181417541..181417576,+;hg_39998.1
name: p41@SOX2-OT
id: hg19::chr3:181417560..181417569,-;hg_45757.1
name: hg_45757.1
id: hg38::chr3:181699418..181699423,+;hg_229013.1
name: p39@SOX2-OT
Overlapped refTSS TSSs

Enhancer Annotation

Overlapped FANTOM5 Enhancers

CRE Annotation

Overlapped SCREEN cCREs: id: EH38E2262634
type: PLS
id: EH38E2262635
type: PLS
id: EH38E3556658
type: PLS
Overlapped SilencerDB Silencers: HS_00048714 (Blood)
HS_00048715 (Mesenchymal stem cell)
HS_00048716 (Cervix)
HS_00048717 (Hematopoietic stem cell)
HS_00048718 (Pancreas)
HS_00048719 (Skin)
HS_00048720 (Breast)
HS_00048721 (Prepuce)
Overlapped VISTA Enhancers

External Links

TogoVar UCSC Genome Browser