CRE ID : FCMM_1902

CRE Name : cp2@Gm20646,cp5@Pantr1,cp3@Pou3f3

Genomic Position
chr1 : 42694740 .. 42695124
Organism
Mouse (GRCm38/mm10)

Promoter/TSS Annotation

Nearest transcript IDs
ENSMUST00000181660.7, ENSMUST00000180689.7, ENSMUST00000188153.6, ENSMUST00000185599.1, ENSMUST00000177136.2, ENSMUST00000239323.1, ENSMUST00000199521.4, ENSMUST00000176807.2, NR_027826.2, NR_168294.1, NR_168292.1, BC094545, AK011437, AK019154, AK048630
Nearest transcript distance
0
Promoter GeneID
108167623, 18993, 66297
Promoter HGNC ID/MGI ID
MGI:102564, MGI:1913547, MGI:5313093
Promoter UniProt ID
Promoter Gene Names
POU domain, class 3, transcription factor 3, POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1, predicted gene 20646
Promoter Gene Symbols
Gm20646, Pantr1, Pou3f3
Promoter Gene Synonyms
2610017I09Rik, Brn-1, Brn1, Gm46091, HST011, Otf8, Pou3f3os, linc-Brn1a, urehr2
Overlapped FANTOM5 CAGE Peaks
id: mm9::chr1:42751658..42751722,-;mm_5665.1
name: p2@Pantr1
id: mm9::chr1:42751738..42751787,+;mm_715.1
name: p1@Gm20646,p1@Gm46091,p6@Pou3f3
id: mm9::chr1:42751793..42751827,+;mm_716.1
name: p2@Gm20646,p7@Pou3f3
id: mm9::chr1:42751793..42751859,-;mm_5666.1
name: p4@Pantr1

Enhancer Annotation

Overlapped FANTOM5 Enhancers

CRE Annotation

Overlapped SCREEN cCREs
id: EM10E0934976
type: PLS
id: EM10E0934977
type: PLS
Overlapped SilencerDB Silencers
MS_01323696 (Embryonic stem cell)
Overlapped VISTA Enhancers

External Links

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Fanta.bio is a collection of functional genome annotations with transcriptional activities. This database is supported by JST NBDC Grant Number JPMJND2202

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CRE data version: v1.2.1 , Website version: v2.0.29-beta.2