CRE ID : FCMM_21

CRE Name : cp2@Gm37587,cp3@Sox17

Genomic Position
chr1 : 4496298 .. 4496717
Organism
Mouse (GRCm38/mm10)

Promoter/TSS Annotation

Nearest transcript IDs
ENSMUST00000027035.9, ENSMUST00000116652.7, ENSMUST00000191647.1, ENSMUST00000192913.1, ENSMUST00000193450.1, AK004781, D49474
Nearest transcript distance
0
Promoter GeneID
20671
Promoter HGNC ID/MGI ID
MGI:107543, MGI:5610815
Promoter UniProt ID
A0A0A6YWS4, A0A0A6YXZ2, Q61473
Promoter Gene Names
SRY (sex determining region Y)-box 17, predicted gene, 37587
Promoter Gene Symbols
Gm37587, Sox17
Promoter Gene Synonyms
Overlapped FANTOM5 CAGE Peaks
id: mm9::chr1:4486453..4486470,-;mm_5084.1
name: p3@Sox17
id: mm9::chr1:4486481..4486501,-;mm_5085.1
name: p2@Sox17
id: mm9::chr1:4486505..4486527,-;mm_5086.1
name: p5@Sox17
id: mm9::chr1:4486530..4486557,-;mm_5087.1
name: p4@Sox17
id: mm9::chr1:4486594..4486612,-;mm_5088.1
name: p6@Sox17

Enhancer Annotation

Overlapped FANTOM5 Enhancers

CRE Annotation

Overlapped SCREEN cCREs
id: EM10E0431249
type: PLS
id: EM10E0431250
type: PLS
Overlapped SilencerDB Silencers
MS_01323414 (Embryonic stem cell)
Overlapped VISTA Enhancers

External Links

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Fanta.bio is a collection of functional genome annotations with transcriptional activities. This database is supported by JST NBDC Grant Number JPMJND2202

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CRE data version: v1.2.0 , Website version: v2.0.29-beta.1