CRE ID : FCMM_49282

CRE Name : cp4@5033430I15Rik,cp3@Atxn1

Genomic Position
chr13 : 45964834 .. 45965418
Organism
Mouse (GRCm38/mm10)

Promoter/TSS Annotation

Nearest transcript IDs
ENSMUST00000091628.10, ENSMUST00000167708.3, ENSMUST00000180110.8, ENSMUST00000221082.1, ENSMUST00000222943.1, ENSMUST00000038032.4, ENSMUST00000189843.1, NM_001199305.1, NM_009124.6, NM_001199304.1, NR_167678.1, AK048268, BC058178, AK169931, AK037692, AK165114, AK017206
Nearest transcript distance
0
Promoter GeneID
20238, 76000
Promoter HGNC ID/MGI ID
MGI:104783, MGI:1923250
Promoter UniProt ID
J3QPR1, P54254, Q9D3Q2
Promoter Gene Names
RIKEN cDNA 5033430I15 gene, ataxin 1
Promoter Gene Symbols
5033430I15Rik, Atxn1
Promoter Gene Synonyms
2900016G23Rik, Atx1, Sca1
Overlapped FANTOM5 CAGE Peaks
id: mm9::chr13:46060333..46060370,-;mm_116546.1
name: p1@Atxn1
id: mm9::chr13:46060580..46060600,+;mm_113790.1
name: p1@5033430I15Rik
Overlapped refTSS TSSs
rfmm_123576.1
rfmm_123577.1

Enhancer Annotation

Overlapped FANTOM5 Enhancers

CRE Annotation

Overlapped SCREEN cCREs
id: EM10E1006002
type: PLS
id: EM10E1006003
type: PLS
id: EM10E1358023
type: PLS
Overlapped SilencerDB Silencers
MS_01340917 (Embryonic stem cell)
Overlapped VISTA Enhancers

External Links

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Fanta.bio is a collection of functional genome annotations with transcriptional activities. This database is supported by JST NBDC Grant Number JPMJND2202

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CRE data version: v1.2.0 , Website version: v2.0.29-beta.2