CRE ID : FCMM_81

CRE Name : cp1@4732440D04Rik,cp2@Rb1cc1

Genomic Position
chr1 : 6214305 .. 6214867
Organism
Mouse (GRCm38/mm10)

Promoter/TSS Annotation

Nearest transcript IDs
ENSMUST00000159618.1, ENSMUST00000027040.12, ENSMUST00000162210.7, NM_009826.4, AK161112, AB050017, AB070619, AK020027
Nearest transcript distance
0
Promoter GeneID
12421, 654788
Promoter HGNC ID/MGI ID
MGI:1341850, MGI:3604103
Promoter UniProt ID
Q8BT47, Q9ESK9
Promoter Gene Names
RB1-inducible coiled-coil 1, RIKEN cDNA 4732440D04 gene
Promoter Gene Symbols
4732440D04Rik, Rb1cc1
Promoter Gene Synonyms
2900055E04Rik, 5930404L04Rik, Cc1, Fip200, LaXp180
Overlapped FANTOM5 CAGE Peaks
id: mm9::chr1:6204517..6204528,-;mm_5109.1
name: p4@4732440D04Rik
id: mm9::chr1:6204596..6204615,-;mm_5110.1
name: p3@4732440D04Rik
id: mm9::chr1:6204620..6204653,-;mm_5111.1
name: p2@4732440D04Rik
id: mm9::chr1:6204655..6204686,-;mm_5112.1
name: p1@4732440D04Rik
id: mm9::chr1:6204708..6204764,+;mm_26.1
name: p1@Rb1cc1
id: mm9::chr1:6204765..6204803,+;mm_27.1
name: p2@Rb1cc1
id: mm9::chr1:6204868..6204882,+;mm_28.1
name: p12@Rb1cc1
id: mm9::chr1:6204887..6204898,+;mm_29.1
name: p11@Rb1cc1
id: mm9::chr1:6204909..6204919,+;mm_30.1
name: p13@Rb1cc1
id: mm9::chr1:6204938..6204947,+;mm_31.1
name: p14@Rb1cc1

Enhancer Annotation

Overlapped FANTOM5 Enhancers

CRE Annotation

Overlapped SCREEN cCREs
id: EM10E1235469
type: pELS
id: EM10E1235470
type: PLS
id: EM10E1235471
type: pELS
Overlapped SilencerDB Silencers
Overlapped VISTA Enhancers

External Links

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Fanta.bio is a collection of functional genome annotations with transcriptional activities. This database is supported by JST NBDC Grant Number JPMJND2202

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CRE data version: v1.2.0 , Website version: v2.0.29-beta.2