CRE ID : FCMM_96103

CRE Name : cp3@Vps13a

Genomic Position
chr19 : 16780739 .. 16781249
Organism
Mouse (GRCm38/mm10)

Promoter/TSS Annotation

Nearest transcript IDs
ENSMUST00000068156.7, ENSMUST00000224149.1, ENSMUST00000224428.1, ENSMUST00000225764.1, NM_173028.4, AB115421, BC145012, AK140793, BC027255, AK052697, AK165475, AB281691, AB281690, AB281689, AK041811
Nearest transcript distance
0
Promoter GeneID
271564
Promoter HGNC ID/MGI ID
MGI:2444304
Promoter UniProt ID
A0A286YCT3, Q3TN78, Q5H8C4, Q8C9M0
Promoter Gene Names
vacuolar protein sorting 13A
Promoter Gene Symbols
Vps13a
Promoter Gene Synonyms
4930516E05Rik, 4930543C13Rik, D330038K10Rik
Overlapped FANTOM5 CAGE Peaks
id: mm9::chr19:16855316..16855325,-;mm_152689.1
name: p10@Vps13a
id: mm9::chr19:16855362..16855387,-;mm_152690.1
name: p3@Vps13a
id: mm9::chr19:16855393..16855457,-;mm_152691.1
name: p1@Vps13a
id: mm9::chr19:16855469..16855480,-;mm_152692.1
name: p2@Vps13a
id: mm9::chr19:16855555..16855565,-;mm_152693.1
name: p6@Vps13a
id: mm9::chr19:16855586..16855597,-;mm_152694.1
name: p7@Vps13a
id: mm9::chr19:16855601..16855610,+;mm_149618.1
name: mm_149618.1

Enhancer Annotation

Overlapped FANTOM5 Enhancers

CRE Annotation

Overlapped SCREEN cCREs
id: EM10E1074823
type: PLS
id: EM10E1473879
type: PLS
Overlapped SilencerDB Silencers
Overlapped VISTA Enhancers

External Links

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Fanta.bio is a collection of functional genome annotations with transcriptional activities. This database is supported by JST NBDC Grant Number JPMJND2202

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CRE data version: v1.2.1 , Website version: v2.0.29-beta.2